Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio)

Peter Kämpfer, Rute Irgang, Hans Jürgen Busse, Matías Poblete-Morales, Tanita Kleinhagauer, Stefanie P. Glaeser, Ruben Avendaño-Herrera

Resultado de la investigación: Article

3 Citas (Scopus)

Resumen

One beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain E3/4T, was isolated from a zebrafish, Danio rerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.5% 16S rRNA gene sequence identity to the type strain of Undibacterium macrobrachii and 97.8% to the type strain of Undibacterium seohonense. Lower 16S rRNA gene sequence similarities (<97.0 %) could be found in comparison with all other species of the genus Undibacterium. DNA–DNA hybridization with Undibacterium macrobrachii LMG 26891T showed a low level of relatedness, <35 %. The main cellular fatty acids of the strain were summed feature 3 fatty acids (C16: 1ω7c/C16: 1ω8c), C10: 0 3-OH and C16: 0. The polyamine pattern of strain E3/4T contained predominantly putrescine and 2-hydroxyputrescine. The major quinone was ubiquinone Q-8. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. On the basis of phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a novel species of the genus Undibacterium, Undibacterium danionis, with strain E3/4T (=DSM 102221T=CCM 8677T=CIP 111017T) as the type strain.

Idioma originalEnglish
Número de artículo001244
Páginas (desde-hasta)3625-3631
Número de páginas7
PublicaciónInternational Journal of Systematic and Evolutionary Microbiology
Volumen66
N.º9
DOI
EstadoPublished - 1 sep 2016

Huella dactilar

Zebrafish
Danio rerio
rRNA Genes
gene
Fatty Acids
fatty acid
phylogenetics
Phosphatidylglycerols
Cardiolipins
Putrescine
Polyamines
relatedness
ribosomal RNA
nucleotide sequences
genomics
lipid
Bacteria
Lipids
bacterium
fatty acids

ASJC Scopus subject areas

  • Microbiology
  • Ecology, Evolution, Behavior and Systematics

Citar esto

Kämpfer, P., Irgang, R., Busse, H. J., Poblete-Morales, M., Kleinhagauer, T., Glaeser, S. P., & Avendaño-Herrera, R. (2016). Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio). International Journal of Systematic and Evolutionary Microbiology, 66(9), 3625-3631. [001244]. https://doi.org/10.1099/ijsem.0.001244
Kämpfer, Peter ; Irgang, Rute ; Busse, Hans Jürgen ; Poblete-Morales, Matías ; Kleinhagauer, Tanita ; Glaeser, Stefanie P. ; Avendaño-Herrera, Ruben. / Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio). En: International Journal of Systematic and Evolutionary Microbiology. 2016 ; Vol. 66, N.º 9. pp. 3625-3631.
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abstract = "One beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain E3/4T, was isolated from a zebrafish, Danio rerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.5{\%} 16S rRNA gene sequence identity to the type strain of Undibacterium macrobrachii and 97.8{\%} to the type strain of Undibacterium seohonense. Lower 16S rRNA gene sequence similarities (<97.0 {\%}) could be found in comparison with all other species of the genus Undibacterium. DNA–DNA hybridization with Undibacterium macrobrachii LMG 26891T showed a low level of relatedness, <35 {\%}. The main cellular fatty acids of the strain were summed feature 3 fatty acids (C16: 1ω7c/C16: 1ω8c), C10: 0 3-OH and C16: 0. The polyamine pattern of strain E3/4T contained predominantly putrescine and 2-hydroxyputrescine. The major quinone was ubiquinone Q-8. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. On the basis of phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a novel species of the genus Undibacterium, Undibacterium danionis, with strain E3/4T (=DSM 102221T=CCM 8677T=CIP 111017T) as the type strain.",
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Kämpfer, P, Irgang, R, Busse, HJ, Poblete-Morales, M, Kleinhagauer, T, Glaeser, SP & Avendaño-Herrera, R 2016, 'Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio)', International Journal of Systematic and Evolutionary Microbiology, vol. 66, n.º 9, 001244, pp. 3625-3631. https://doi.org/10.1099/ijsem.0.001244

Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio). / Kämpfer, Peter; Irgang, Rute; Busse, Hans Jürgen; Poblete-Morales, Matías; Kleinhagauer, Tanita; Glaeser, Stefanie P.; Avendaño-Herrera, Ruben.

En: International Journal of Systematic and Evolutionary Microbiology, Vol. 66, N.º 9, 001244, 01.09.2016, p. 3625-3631.

Resultado de la investigación: Article

TY - JOUR

T1 - Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio)

AU - Kämpfer, Peter

AU - Irgang, Rute

AU - Busse, Hans Jürgen

AU - Poblete-Morales, Matías

AU - Kleinhagauer, Tanita

AU - Glaeser, Stefanie P.

AU - Avendaño-Herrera, Ruben

PY - 2016/9/1

Y1 - 2016/9/1

N2 - One beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain E3/4T, was isolated from a zebrafish, Danio rerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.5% 16S rRNA gene sequence identity to the type strain of Undibacterium macrobrachii and 97.8% to the type strain of Undibacterium seohonense. Lower 16S rRNA gene sequence similarities (<97.0 %) could be found in comparison with all other species of the genus Undibacterium. DNA–DNA hybridization with Undibacterium macrobrachii LMG 26891T showed a low level of relatedness, <35 %. The main cellular fatty acids of the strain were summed feature 3 fatty acids (C16: 1ω7c/C16: 1ω8c), C10: 0 3-OH and C16: 0. The polyamine pattern of strain E3/4T contained predominantly putrescine and 2-hydroxyputrescine. The major quinone was ubiquinone Q-8. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. On the basis of phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a novel species of the genus Undibacterium, Undibacterium danionis, with strain E3/4T (=DSM 102221T=CCM 8677T=CIP 111017T) as the type strain.

AB - One beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain E3/4T, was isolated from a zebrafish, Danio rerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.5% 16S rRNA gene sequence identity to the type strain of Undibacterium macrobrachii and 97.8% to the type strain of Undibacterium seohonense. Lower 16S rRNA gene sequence similarities (<97.0 %) could be found in comparison with all other species of the genus Undibacterium. DNA–DNA hybridization with Undibacterium macrobrachii LMG 26891T showed a low level of relatedness, <35 %. The main cellular fatty acids of the strain were summed feature 3 fatty acids (C16: 1ω7c/C16: 1ω8c), C10: 0 3-OH and C16: 0. The polyamine pattern of strain E3/4T contained predominantly putrescine and 2-hydroxyputrescine. The major quinone was ubiquinone Q-8. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. On the basis of phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a novel species of the genus Undibacterium, Undibacterium danionis, with strain E3/4T (=DSM 102221T=CCM 8677T=CIP 111017T) as the type strain.

KW - Danio rerio

KW - Fish-associated

KW - Undibacterium

KW - Undibacterium danionis

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U2 - 10.1099/ijsem.0.001244

DO - 10.1099/ijsem.0.001244

M3 - Article

AN - SCOPUS:84991085071

VL - 66

SP - 3625

EP - 3631

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

SN - 1466-5026

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ER -

Kämpfer P, Irgang R, Busse HJ, Poblete-Morales M, Kleinhagauer T, Glaeser SP y otros. Undibacterium danionis sp. Nov. isolated from a zebrafish (Danio rerio). International Journal of Systematic and Evolutionary Microbiology. 2016 sep 1;66(9):3625-3631. 001244. https://doi.org/10.1099/ijsem.0.001244