A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans

G. Levicán; A. Katz; J. Valdés; R. Quatrini; D. S. Holmes; O. Orellana

doi:10.4028/www.scientific.net/AMR.71-73.187

A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans

G. Levicán, A. Katz, J. Valdés, R. Quatrini, D. S. Holmes, O. Orellana

Facultad de Ciencias de la Vida

Resultado de la investigación: Contribución a los tipos de informe/libro › Contribución a la conferencia › revisión exhaustiva

18 Citas (Scopus)

Resumen

The genome sequences from two strains of the acidophilic, autotrophic, chemolithotrophic proteobacterium A. ferrooxidans are available from genome databases. Bioinformatic sequence comparison revealed the existence in one strain of a putative integrative conjugative element (ICE), containing an entire set of clustered tRNA genes. ICE is missing in the other strain, suggesting that this element as well as the tRNA genes cluster is dispensable for the bacterium. Bioinformatic predictions suggest that the tRNA genes cluster might mainly contribute to the translation of ICE encoded genes.

Idioma original	Inglés
Título de la publicación alojada	Biohydrometallurgy 2009
Subtítulo de la publicación alojada	A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009
Páginas	187-190
Número de páginas	4
DOI	https://doi.org/10.4028/www.scientific.net/AMR.71-73.187
Estado	Publicada - 2009
Evento	18th International Biohydrometallurgy Symposium, IBS 2009 - Bariloche, Argentina Duración: 13 sept. 2009 → 17 sept. 2009

Serie de la publicación

Nombre	Advanced Materials Research
Volumen	71-73
ISSN (versión impresa)	1022-6680

Otros

Otros	18th International Biohydrometallurgy Symposium, IBS 2009
País/Territorio	Argentina
Ciudad	Bariloche
Período	13/09/09 → 17/09/09

Áreas temáticas de ASJC Scopus

Ingeniería (todo)

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10.4028/www.scientific.net/AMR.71-73.187

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Levicán, G., Katz, A., Valdés, J., Quatrini, R., Holmes, D. S., & Orellana, O. (2009). A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans. En Biohydrometallurgy 2009: A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009 (pp. 187-190). (Advanced Materials Research; Vol. 71-73). https://doi.org/10.4028/www.scientific.net/AMR.71-73.187

Levicán, G. ; Katz, A. ; Valdés, J. ; Quatrini, R. ; Holmes, D. S. ; Orellana, O. / A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans. Biohydrometallurgy 2009: A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009. 2009. pp. 187-190 (Advanced Materials Research).

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title = "A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans",

abstract = "The genome sequences from two strains of the acidophilic, autotrophic, chemolithotrophic proteobacterium A. ferrooxidans are available from genome databases. Bioinformatic sequence comparison revealed the existence in one strain of a putative integrative conjugative element (ICE), containing an entire set of clustered tRNA genes. ICE is missing in the other strain, suggesting that this element as well as the tRNA genes cluster is dispensable for the bacterium. Bioinformatic predictions suggest that the tRNA genes cluster might mainly contribute to the translation of ICE encoded genes.",

keywords = "Integrative conjugative elements, Rare tRNA, tRNAS gene cluster",

author = "G. Levic{\'a}n and A. Katz and J. Vald{\'e}s and R. Quatrini and Holmes, {D. S.} and O. Orellana",

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Levicán, G, Katz, A, Valdés, J, Quatrini, R, Holmes, DS & Orellana, O 2009, A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans. En Biohydrometallurgy 2009: A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009. Advanced Materials Research, vol. 71-73, pp. 187-190, 18th International Biohydrometallurgy Symposium, IBS 2009, Bariloche, Argentina, 13/09/09. https://doi.org/10.4028/www.scientific.net/AMR.71-73.187

A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans. / Levicán, G.; Katz, A.; Valdés, J.; Quatrini, R.; Holmes, D. S.; Orellana, O.

Biohydrometallurgy 2009: A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009. 2009. p. 187-190 (Advanced Materials Research; Vol. 71-73).

Resultado de la investigación: Contribución a los tipos de informe/libro › Contribución a la conferencia › revisión exhaustiva

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AU - Levicán, G.

AU - Katz, A.

AU - Valdés, J.

AU - Quatrini, R.

AU - Holmes, D. S.

AU - Orellana, O.

PY - 2009

Y1 - 2009

N2 - The genome sequences from two strains of the acidophilic, autotrophic, chemolithotrophic proteobacterium A. ferrooxidans are available from genome databases. Bioinformatic sequence comparison revealed the existence in one strain of a putative integrative conjugative element (ICE), containing an entire set of clustered tRNA genes. ICE is missing in the other strain, suggesting that this element as well as the tRNA genes cluster is dispensable for the bacterium. Bioinformatic predictions suggest that the tRNA genes cluster might mainly contribute to the translation of ICE encoded genes.

AB - The genome sequences from two strains of the acidophilic, autotrophic, chemolithotrophic proteobacterium A. ferrooxidans are available from genome databases. Bioinformatic sequence comparison revealed the existence in one strain of a putative integrative conjugative element (ICE), containing an entire set of clustered tRNA genes. ICE is missing in the other strain, suggesting that this element as well as the tRNA genes cluster is dispensable for the bacterium. Bioinformatic predictions suggest that the tRNA genes cluster might mainly contribute to the translation of ICE encoded genes.

KW - Integrative conjugative elements

KW - Rare tRNA

KW - tRNAS gene cluster

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U2 - 10.4028/www.scientific.net/AMR.71-73.187

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SN - 0878493220

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BT - Biohydrometallurgy 2009

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Levicán G, Katz A, Valdés J, Quatrini R, Holmes DS, Orellana O. A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans. En Biohydrometallurgy 2009: A Meeting Point between Microbial Ecology, Metal Recovery Processes and Environmental Remediation - Selected, peer rev. papers 18th Int. Biohydrometallurgy Symp., IBS 2009. 2009. p. 187-190. (Advanced Materials Research). https://doi.org/10.4028/www.scientific.net/AMR.71-73.187

A 300 kpb genome segment, including a complete set of tRNA genes, is dispensable for Acidithiobacillus ferrooxidans

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