TY - JOUR
T1 - Tenacibaculum piscium Sp. Nov., isolated from skin ulcers of sea-farmed fish, and description of tenacibaculum finnmarkense Sp. nov. with subdivision into genomovars finnmarkense and ulcerans
AU - Olsen, Anne Berit
AU - Spilsberg, Bjørn
AU - Nilsen, Hanne K.
AU - Lagesen, Karin
AU - Gulla, Snorre
AU - Avendaño-Herrera, Ruben
AU - Irgang, Rute
AU - Duchaud, Eric
AU - Colquhoun, Duncan J.
N1 - Funding Information:
The study was funded by the EU EMIDA ERA-NET project ‘Control Flavo-bacteriaceae Infections in European Fish Farms’ (RCN 202834/F40), and FHF - Norwegian Seafood Research Fund project ‘Tenacibaculum spp. as cause of atypical winter ulcer in Norwegian farmed Atlantic salmon’ (no. 901434).
Publisher Copyright:
© 2020 The Authors.
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2020
Y1 - 2020
N2 - Results of previous multilocus sequence and whole-genome-based analyses have suggested that a homogeneous group of isolates belonging to the genus Tenacibaculum, represented by strain TNO020T and associated with skin ulcer development in sea-farmed fish, represents an as-yet-undescribed species. Comparative whole-genome analysis performed in the present study clustered five isolates, including TNO020T, in a distinct lineage within the genus Tenacibaculum. Phenotypic differences, high intra-cluster average nucleotide identity (ANI) values and low ANI values with other Tenacibaculum species support the proposal of a novel species, for which we propose the name Tenacibaculum piscium sp. nov. with strain TNO020T (=CCUG 73833T=NCIMB 15240T) as the type strain. Further, large-scale genome analyses confirmed the existence of two different phylogenetic lineages within ‘T. finnmarkense’, a species effectively but not validly published previously. ANI values just above the species delineation threshold of 95–96% confirmed that both lineages belong to the same species. This result was also supported by DNA–DNA hybridization values. Phenotypically, the two conspecific lineages are distinguishable by differences in growth temperature range and ability to degrade l-proline. For the group of isolates already commonly known as ‘T. finnmarkense’, we propose the name Tenacibaculum finnmarkense sp. nov., with strain TNO006T (=CCUG 73831T=NCIMB 15238T) as the type strain. We further propose the subdivision of T. finnmarkense sp. nov. into two genomovars, T. finnmarkense genomovar finnmarkense with strain TNO006T (=CCUG 73831T=NCIMB 15238T) as the type strain and T. finnmarkense genomovar ulcerans with strain TNO010T (=CCUG 73832T=NCIMB 15239T) as the type strain.
AB - Results of previous multilocus sequence and whole-genome-based analyses have suggested that a homogeneous group of isolates belonging to the genus Tenacibaculum, represented by strain TNO020T and associated with skin ulcer development in sea-farmed fish, represents an as-yet-undescribed species. Comparative whole-genome analysis performed in the present study clustered five isolates, including TNO020T, in a distinct lineage within the genus Tenacibaculum. Phenotypic differences, high intra-cluster average nucleotide identity (ANI) values and low ANI values with other Tenacibaculum species support the proposal of a novel species, for which we propose the name Tenacibaculum piscium sp. nov. with strain TNO020T (=CCUG 73833T=NCIMB 15240T) as the type strain. Further, large-scale genome analyses confirmed the existence of two different phylogenetic lineages within ‘T. finnmarkense’, a species effectively but not validly published previously. ANI values just above the species delineation threshold of 95–96% confirmed that both lineages belong to the same species. This result was also supported by DNA–DNA hybridization values. Phenotypically, the two conspecific lineages are distinguishable by differences in growth temperature range and ability to degrade l-proline. For the group of isolates already commonly known as ‘T. finnmarkense’, we propose the name Tenacibaculum finnmarkense sp. nov., with strain TNO006T (=CCUG 73831T=NCIMB 15238T) as the type strain. We further propose the subdivision of T. finnmarkense sp. nov. into two genomovars, T. finnmarkense genomovar finnmarkense with strain TNO006T (=CCUG 73831T=NCIMB 15238T) as the type strain and T. finnmarkense genomovar ulcerans with strain TNO010T (=CCUG 73832T=NCIMB 15239T) as the type strain.
KW - CgMLST
KW - Tenacibaculosis
KW - Tenacibaculum finnmarkense
KW - Tenacibaculum finnmarkense genomovar finnmarkense
KW - Tenacibaculum finnmarkense genomovar ulcerans
KW - Tenacibaculum piscium
UR - http://www.scopus.com/inward/record.url?scp=85098251624&partnerID=8YFLogxK
U2 - 10.1099/ijsem.0.004501
DO - 10.1099/ijsem.0.004501
M3 - Article
C2 - 33079030
AN - SCOPUS:85098251624
SN - 1466-5026
VL - 70
SP - 6079
EP - 6090
JO - International Journal of Systematic and Evolutionary Microbiology
JF - International Journal of Systematic and Evolutionary Microbiology
IS - 12
M1 - 004501
ER -