Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture

Daniel J. Macqueen; Craig R. Primmer; Ross D. Houston; Barbara F. Nowak; Louis Bernatchez; Steinar Bergseth; William S. Davidson; Cristian Gallardo-Escárate; Tom Goldammer; Yann Guiguen; Patricia Iturra; James W. Kijas; Ben F. Koop; Sigbjørn Lien; Alejandro Maass; Samuel A.M. Martin; Philip McGinnity; Martin Montecino; Kerry A. Naish; Krista M. Nichols; Kristinn Ólafsson; Stig W. Omholt; Yniv Palti; Graham S. Plastow; Caird E. Rexroad; Matthew L. Rise; Rachael J. Ritchie; Simen R. Sandve; Patricia M. Schulte; Alfredo Tello; Rodrigo Vidal; Jon Olav Vik; Anna Wargelius; José Manuel Yáñez; The FAASG Consortium

doi:10.1186/s12864-017-3862-8

Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture

Daniel J. Macqueen, Craig R. Primmer, Ross D. Houston, Barbara F. Nowak, Louis Bernatchez, Steinar Bergseth, William S. Davidson, Cristian Gallardo-Escárate, Tom Goldammer, Yann Guiguen, Patricia Iturra, James W. Kijas, Ben F. Koop, Sigbjørn Lien, Alejandro Maass, Samuel A.M. Martin, Philip McGinnity, Martin Montecino, Kerry A. Naish, Krista M. NicholsKristinn Ólafsson, Stig W. Omholt, Yniv Palti, Graham S. Plastow, Caird E. Rexroad, Matthew L. Rise, Rachael J. Ritchie, Simen R. Sandve, Patricia M. Schulte, Alfredo Tello, Rodrigo Vidal, Jon Olav Vik, Anna Wargelius, José Manuel Yáñez, The FAASG Consortium

Research output: Contribution to journal › Editorial › peer-review

68 Citations (Scopus)

Abstract

We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.

Original language	English
Article number	484
Journal	BMC Genomics
Volume	18
Issue number	1
DOIs	https://doi.org/10.1186/s12864-017-3862-8
Publication status	Published - 27 Jun 2017

Keywords

Aquaculture
Comparative biology
Data sharing
Evolution
Functional annotation
Genome biology
Phenotyping
Salmonid fish
Standardized data and metadata
Whole genome duplication

ASJC Scopus subject areas

Biotechnology
Genetics

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Macqueen, D. J., Primmer, C. R., Houston, R. D., Nowak, B. F., Bernatchez, L., Bergseth, S., Davidson, W. S., Gallardo-Escárate, C., Goldammer, T., Guiguen, Y., Iturra, P., Kijas, J. W., Koop, B. F., Lien, S., Maass, A., Martin, S. A. M., McGinnity, P., Montecino, M., Naish, K. A., ... The FAASG Consortium (2017). Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture. BMC Genomics, 18(1), Article 484. https://doi.org/10.1186/s12864-017-3862-8

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title = "Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture",

abstract = "We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.",

keywords = "Aquaculture, Comparative biology, Data sharing, Evolution, Functional annotation, Genome biology, Phenotyping, Salmonid fish, Standardized data and metadata, Whole genome duplication",

author = "Macqueen, {Daniel J.} and Primmer, {Craig R.} and Houston, {Ross D.} and Nowak, {Barbara F.} and Louis Bernatchez and Steinar Bergseth and Davidson, {William S.} and Cristian Gallardo-Esc{\'a}rate and Tom Goldammer and Yann Guiguen and Patricia Iturra and Kijas, {James W.} and Koop, {Ben F.} and Sigbj{\o}rn Lien and Alejandro Maass and Martin, {Samuel A.M.} and Philip McGinnity and Martin Montecino and Naish, {Kerry A.} and Nichols, {Krista M.} and Kristinn {\'O}lafsson and Omholt, {Stig W.} and Yniv Palti and Plastow, {Graham S.} and Rexroad, {Caird E.} and Rise, {Matthew L.} and Ritchie, {Rachael J.} and Sandve, {Simen R.} and Schulte, {Patricia M.} and Alfredo Tello and Rodrigo Vidal and Vik, {Jon Olav} and Anna Wargelius and Y{\'a}{\~n}ez, {Jos{\'e} Manuel} and {The FAASG Consortium}",

note = "Publisher Copyright: {\textcopyright} 2017 The Author(s).",

year = "2017",

month = jun,

day = "27",

doi = "10.1186/s12864-017-3862-8",

language = "English",

volume = "18",

journal = "BMC Genomics",

issn = "1471-2164",

publisher = "BioMed Central Ltd.",

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Macqueen, DJ, Primmer, CR, Houston, RD, Nowak, BF, Bernatchez, L, Bergseth, S, Davidson, WS, Gallardo-Escárate, C, Goldammer, T, Guiguen, Y, Iturra, P, Kijas, JW, Koop, BF, Lien, S, Maass, A, Martin, SAM, McGinnity, P, Montecino, M, Naish, KA, Nichols, KM, Ólafsson, K, Omholt, SW, Palti, Y, Plastow, GS, Rexroad, CE, Rise, ML, Ritchie, RJ, Sandve, SR, Schulte, PM, Tello, A, Vidal, R, Vik, JO, Wargelius, A, Yáñez, JM & The FAASG Consortium 2017, 'Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture', BMC Genomics, vol. 18, no. 1, 484. https://doi.org/10.1186/s12864-017-3862-8

TY - JOUR

T1 - Functional Annotation of All Salmonid Genomes (FAASG)

T2 - An international initiative supporting future salmonid research, conservation and aquaculture

AU - Macqueen, Daniel J.

AU - Primmer, Craig R.

AU - Houston, Ross D.

AU - Nowak, Barbara F.

AU - Bernatchez, Louis

AU - Bergseth, Steinar

AU - Davidson, William S.

AU - Gallardo-Escárate, Cristian

AU - Goldammer, Tom

AU - Guiguen, Yann

AU - Iturra, Patricia

AU - Kijas, James W.

AU - Koop, Ben F.

AU - Lien, Sigbjørn

AU - Maass, Alejandro

AU - Martin, Samuel A.M.

AU - McGinnity, Philip

AU - Montecino, Martin

AU - Naish, Kerry A.

AU - Nichols, Krista M.

AU - Ólafsson, Kristinn

AU - Omholt, Stig W.

AU - Palti, Yniv

AU - Plastow, Graham S.

AU - Rexroad, Caird E.

AU - Rise, Matthew L.

AU - Ritchie, Rachael J.

AU - Sandve, Simen R.

AU - Schulte, Patricia M.

AU - Tello, Alfredo

AU - Vidal, Rodrigo

AU - Vik, Jon Olav

AU - Wargelius, Anna

AU - Yáñez, José Manuel

AU - The FAASG Consortium

PY - 2017/6/27

Y1 - 2017/6/27

N2 - We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.

AB - We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.

KW - Aquaculture

KW - Comparative biology

KW - Data sharing

KW - Evolution

KW - Functional annotation

KW - Genome biology

KW - Phenotyping

KW - Salmonid fish

KW - Standardized data and metadata

KW - Whole genome duplication

UR - http://www.scopus.com/inward/record.url?scp=85021267102&partnerID=8YFLogxK

U2 - 10.1186/s12864-017-3862-8

DO - 10.1186/s12864-017-3862-8

M3 - Editorial

AN - SCOPUS:85021267102

SN - 1471-2164

VL - 18

JO - BMC Genomics

JF - BMC Genomics

IS - 1

M1 - 484

ER -

Functional Annotation of All Salmonid Genomes (FAASG): An international initiative supporting future salmonid research, conservation and aquaculture

Abstract

Keywords

ASJC Scopus subject areas

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