Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis

José M. Yáñez; Grazyella M. Yoshida; Angel Parra; Katharina Correa; Agustin Barria; Liane N. Bassini; Kris Christensen; Maria E. Lopez DInamarca; Roberto Carvalheiro; Jean P. Lhorente; Rodrigo E. Pulgar

doi:10.3389/fgene.2019.00665

Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis

José M. Yáñez, Grazyella M. Yoshida, Angel Parra, Katharina Correa, Agustin Barria, Liane N. Bassini, Kris Christensen, Maria E. Lopez DInamarca, Roberto Carvalheiro, Jean P. Lhorente, Rodrigo E. Pulgar

Research output: Contribution to journal › Article › peer-review

17 Citations (Scopus)

Original language	English
Article number	665
Journal	Frontiers in Genetics
Volume	10
Issue number	JUN
DOIs	https://doi.org/10.3389/fgene.2019.00665
Publication status	Published - 5 Aug 2019

Keywords

Atlantic salmon
Coho salmon
Comparative genomics
Genome-wide association study
Piscirickettsia salmonis
Piscirickettsiosis
Rainbow trout

ASJC Scopus subject areas

Molecular Medicine
Genetics
Genetics(clinical)

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10.3389/fgene.2019.00665

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Yáñez, J. M., Yoshida, G. M., Parra, A., Correa, K., Barria, A., Bassini, L. N., Christensen, K., Lopez DInamarca, M. E., Carvalheiro, R., Lhorente, J. P., & Pulgar, R. E. (2019). Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis. Frontiers in Genetics, 10(JUN), Article 665. https://doi.org/10.3389/fgene.2019.00665

@article{9657b8973c184fb3afe207ee4dcf66c2,

title = "Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis",

keywords = "Atlantic salmon, Coho salmon, Comparative genomics, Genome-wide association study, Piscirickettsia salmonis, Piscirickettsiosis, Rainbow trout",

author = "Y{\'a}{\~n}ez, {Jos{\'e} M.} and Yoshida, {Grazyella M.} and Angel Parra and Katharina Correa and Agustin Barria and Bassini, {Liane N.} and Kris Christensen and {Lopez DInamarca}, {Maria E.} and Roberto Carvalheiro and Lhorente, {Jean P.} and Pulgar, {Rodrigo E.}",

note = "Funding Information: Aguas Claras, Pesquera Antares, and Salmones Chaicas provided the CS, RT, and AS datasets, respectively. GY and RC acknowledge the FAPESP (2014/20626-4; 2015/25232-7) and CNPq (308636/2014-7) for the financial support. AB and KCo acknowledge the National Commission of Scientific and Technologic Research (CONICYT) for the funding through the national Ph.D. funding program. RP acknowledges the CONICYT for the funding through the Fondecyt program (11161083). AB acknowledges the Government of Canada for the funding through the Canada–Chile Leadership Exchange Scholarship. We acknowledges the Centro de Investigaci{\'o}n en Alimentos para el Bienestar en el Ciclo Vital (ABCvital) for funding this publication. We also want to thank the World Congress on Genetics Applied to Livestock Production as this work has been partially presented on this conference (Yoshida et al., 2018b). Funding Information: This project was funded by the U-Inicia grant, from the Vicerrectoria de Investigaci{\'o}n y Desarrollo, Universidad de Chile. This work was conceived of under the framework of the grant FONDEF NEWTON-PICARTE (IT14I10100), funded by CONICYT (Government of Chile). This work has been partially supported by N{\'u}cleo Milenio INVASAL from Iniciativa Cient{\'i}fica Milenio (Ministerio de Econom{\'i}a, Fomento y Turismo, Gobierno de Chile). This research was carried out in conjunction with EPIC4 (Enhanced Production in Coho: Culture, Community, Catch), a project supported by the government of Canada through Genome Canada, Genome British Columbia, and Genome Quebec.",

year = "2019",

month = aug,

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doi = "10.3389/fgene.2019.00665",

language = "English",

volume = "10",

journal = "Frontiers in Genetics",

issn = "1664-8021",

publisher = "Frontiers Media S.A.",

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Yáñez, JM, Yoshida, GM, Parra, A, Correa, K, Barria, A, Bassini, LN, Christensen, K, Lopez DInamarca, ME, Carvalheiro, R, Lhorente, JP & Pulgar, RE 2019, 'Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis', Frontiers in Genetics, vol. 10, no. JUN, 665. https://doi.org/10.3389/fgene.2019.00665

TY - JOUR

T1 - Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis

AU - Yáñez, José M.

AU - Yoshida, Grazyella M.

AU - Parra, Angel

AU - Correa, Katharina

AU - Barria, Agustin

AU - Bassini, Liane N.

AU - Christensen, Kris

AU - Lopez DInamarca, Maria E.

AU - Carvalheiro, Roberto

AU - Lhorente, Jean P.

AU - Pulgar, Rodrigo E.

N1 - Funding Information: Aguas Claras, Pesquera Antares, and Salmones Chaicas provided the CS, RT, and AS datasets, respectively. GY and RC acknowledge the FAPESP (2014/20626-4; 2015/25232-7) and CNPq (308636/2014-7) for the financial support. AB and KCo acknowledge the National Commission of Scientific and Technologic Research (CONICYT) for the funding through the national Ph.D. funding program. RP acknowledges the CONICYT for the funding through the Fondecyt program (11161083). AB acknowledges the Government of Canada for the funding through the Canada–Chile Leadership Exchange Scholarship. We acknowledges the Centro de Investigación en Alimentos para el Bienestar en el Ciclo Vital (ABCvital) for funding this publication. We also want to thank the World Congress on Genetics Applied to Livestock Production as this work has been partially presented on this conference (Yoshida et al., 2018b). Funding Information: This project was funded by the U-Inicia grant, from the Vicerrectoria de Investigación y Desarrollo, Universidad de Chile. This work was conceived of under the framework of the grant FONDEF NEWTON-PICARTE (IT14I10100), funded by CONICYT (Government of Chile). This work has been partially supported by Núcleo Milenio INVASAL from Iniciativa Científica Milenio (Ministerio de Economía, Fomento y Turismo, Gobierno de Chile). This research was carried out in conjunction with EPIC4 (Enhanced Production in Coho: Culture, Community, Catch), a project supported by the government of Canada through Genome Canada, Genome British Columbia, and Genome Quebec.

PY - 2019/8/5

Y1 - 2019/8/5

KW - Atlantic salmon

KW - Coho salmon

KW - Comparative genomics

KW - Genome-wide association study

KW - Piscirickettsia salmonis

KW - Piscirickettsiosis

KW - Rainbow trout

UR - http://www.scopus.com/inward/record.url?scp=85069043561&partnerID=8YFLogxK

U2 - 10.3389/fgene.2019.00665

DO - 10.3389/fgene.2019.00665

M3 - Article

AN - SCOPUS:85069043561

SN - 1664-8021

VL - 10

JO - Frontiers in Genetics

JF - Frontiers in Genetics

IS - JUN

M1 - 665

ER -

Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacterium Piscirickettsia salmonis

Keywords

ASJC Scopus subject areas

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